PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF002300100CFD_t1
Common NameTRAES_3BF002300100CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 396aa    MW: 43990 Da    PI: 4.9009
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF002300100CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.12.8e-33411312101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++++sws+ +ns+vv+d ++f++ +Lp++Fkhsnf+SFv+QLn+YgF+kv+ ++         weF+++ F 
  TRAES3BF002300100CFD_t1  41 FLTKTYDMVDDRSTDDVVSWSAGNNSLVVWDLHHFSTVLLPRHFKHSNFSSFVKQLNTYGFRKVDPDR---------WEFANEGFL 117
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+++ll++i+r++
  TRAES3BF002300100CFD_t1 118 RGQRHLLKNIRRRR 131
                              ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.7E-5537130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3538130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3239130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-2941130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDPMPTLVKE EEDGHGTGES PGATAASRPV KGLRDARPSL FLTKTYDMVD DRSTDDVVSW  60
SAGNNSLVVW DLHHFSTVLL PRHFKHSNFS SFVKQLNTYG FRKVDPDRWE FANEGFLRGQ  120
RHLLKNIRRR RPPANTASNQ QSLGSYLEVG HFGNHTDTDQ LKRDKQLLMA EVVKLRQEQQ  180
SMKTHLKGME ERLHGTERKQ QQMTAFLARV FQKPELLKQL ISLNGVRKEL HDAMSKKRRR  240
SIGQGPEADD MGASGSLEQE SPVLSDPHES VELLGEGSVE LLADGVPSEL ESSAALLADG  300
IPPDLEGAAE LLVDVIPSDL NDSGVDTNGV KPQDFGLGTC EVQQNRAQGA LHDDFWEELM  360
SRALSGEDDN PDNVDDMDVL SEKTDFLVPN STTRAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-224113029129Heat shock factor protein 1
5d5v_B6e-224113029129Heat shock factor protein 1
5d5v_D6e-224113029129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117130RGQRHLLKNIRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228292.11e-175PREDICTED: heat stress transcription factor A-2b-like
RefseqXP_010228293.11e-175PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-157HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A077RW180.0A0A077RW18_WHEAT; Uncharacterized protein
STRINGMLOC_75519.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-86heat shock transcription factor A6B
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]